Publications
Thompson, C.M., M.P. Hare, and S.M. Gallager. In revision. Automated image-analysis for the identification of bivalve larvae from a Cape Cod estuary. Limnology & Oceanography.
Thompson, P., B. Rosenthal, and M.P. Hare. In revision. Microsatellite genotypes reveal some long distance gene flow in Perkinsus marinus, a major pathogen of eastern oysters. Marine Biology.
Zhang, H. and M.P. Hare. 2012. Identifying and reducing AFLP genotyping error: An example of tradeoffs when comparing population structure in broadcast spawning versus brooding oysters. Heredity DOI: 10.1038/hdy.2011.132.
Kruse, I., M.P. Hare & A.H. Hines. 2011. Genetic relationships of the marine invasive crab parasite Loxothylacus panopaei: an analysis of DNA sequence variation, host specificity, and distributional range. Biological Invasions DOI: 10.1007/s10530-011-0111-y.
Chen, G. and M.P. Hare. 2011. Cryptic diversity and comparative phylogeography of the estuarine copepod Acartia tonsa on the US Atlantic coast. Molecular Ecology 20(11): 2425-2441.
Hare, M., L. Nunney, M. Schwartz, D. Ruzzante, M. Burford, R. Waples, K. Ruegg, and F. Palstra. 2011. Understanding and estimating effective population size for practical applications in marine species management. Conservation Biology 25(3): 438-449.
Thompson, P., B. Rosenthal, and M.P. Hare. 2011. An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus. Infection, Genetics and Evolution 11(3): 598-609.
Hare, M.P., J. Weinberg, O. Peterfalvy and M. Davidson. 2010. The “southern” surfclam (Spisula solidissima) found north of its reported range: A commercially harvested population in Long Island Sound, New York. Journal of Shellfish Research. 29(4):799-807.
Zhang, H., J. Scarpa, and M.P. Hare. 2010. Differential fertilization success between two populations of eastern oyster, Crassostrea virginica. Biological Bulletin 219:142-150.
Carlsson, J., R.B. Carnegie, J.F. Cordes, M.P. Hare, T.
Leggett, K.S. Reece. 2008. Evaluating recruitment contribution of a selectively
bred aquaculture line of the oyster, Crassostrea virginica used in restoration efforts. Journal of Shellfish Research 27(5):1117-1124.
Chen, G. and M.P. Hare. 2008. Cryptic ecological diversification of a planktonic estuarine copepod, Acartia tonsa. Molecular Ecology 17:1451-1468.
Wangchuk,
T., D.W. Inouye, and M.P. Hare. 2008.
The emergence of an endangered species: Evolution and phylogeny of the Trachypithecus
geei of
Kruse,
Hare, M. P., S. K. Allen Jr., P. Bloomer, M. D. Camara, M. D. Carnegie, J.
Murfree, M. W. Luckenbach, D. Merritt, C. Morrison, K. T. Paynter, K. S. Reece,
and C. G. Rose. 2006. A genetic test for recruitment enhancement in
Rose, C. G., K. T. Paynter, and M. Hare. 2006. Isolation by distance in the
eastern oyster, Crassostrea virginica, in
Hare, M.P., C. Guenther and W.F. Fagan. 2005. Nonrandom larval dispersal can
steepen marine clines. Evolution
59:2509-2517.
Hare, M.P. and J. Weinberg. 2005. Phylogeography of surf clams, Spisula
solidissima, in the western
Robinson T.B., C.L. Griffiths, A. Tonin, P. Bloomer & M.P. Hare. 2005. Naturalized populations of Crassostrea gigas along the South African coast: distribution, abundance and population structure. Journal of Shellfish Research 24(2):443-450.
Hare, M.P. and S.R. Palumbi. 2003. High intron sequence conservation across three mammalian orders suggests functional constraints. Molecular Biology and Evolution 20(6):969-978.
Wangchuk, T., D.W. Inouye and M.P. Hare. 2003. A new subspecies of golden langur (Trachypithecus geei) from Bhutan. Folia Primatol 74:104-108.
Hare, M.P., F. Cipriano and S.R. Palumbi. 2002.
Genetic evidence on the demography of speciation in allopatric dolphin species.
Evolution 56:804-816.
Hare, M.P. 2001. Prospects for nuclear gene phylogeography. Trends in Ecology and Evolution
16(12):700-706.
Palumbi, S. R., F. Cipriano and M. P. Hare. 2001. Predicting nuclear gene
coalescence from mitochondrial data: The three-times rule. Evolution 55:859-868.
Hare, M.P., S.R. Palumbi and
Hare, M.P. and S. R. Palumbi. 1999. The accuracy of heterozygous base calling
from diploid sequence and resolution of haplotypes using allele-specific sequencing.
Molecular Ecology 8:1750-1752.
Hare, M.P. 1998. Using mitochondrial DNA gene trees and nuclear RFLPs to
predict genealogical patterns at nuclear loci: examples from the American
oyster. Proceedings of the trinational workshop on molecular evolution, M.
Uyenoyama and A. von Haeseler, eds. Duke Publications Group, Duke University,
Durham, NC.
Hare, M.P. and J.C. Avise. 1998. Population structure in the American oyster as
inferred by nuclear gene genealogies. Molecular
Biology and Evolution 15:119-128.
Orti, G., M.P. Hare, and J.C. Avise. 1997. Detection and isolation of nuclear
haplotypes by PCR-SSCP. Molecular Ecology
6:575-580.
Hare, M.P. and J.C. Avise. 1996. Molecular genetic analysis of a stepped
multilocus cline in the American oyster (Crassostrea virginica). Evolution 50:2305-2315.
Hare, M.P., S.A. Karl, and J.C. Avise. 1996. Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves. Molecular Biology and Evolution
13:334-345.
Hare, M.P, and G.F. Shields. 1992. Mitochondrial-DNA variation in the polytypic Alaskan Song Sparrow. Auk 109(1):126-132.
Foster, N.R. and M.P. Hare. 1990. Cephalopod remains from a Cuvier's beaked whale (Ziphius cavirostris) stranded in Kodiak, Alaska. Northwestern Naturalist 71:49-51.